PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco022929.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WOX
Protein Properties Length: 169aa    MW: 18168.4 Da    PI: 10.2196
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco022929.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-1968129257
                  T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  ++R+ +t+eq+++L +l+++   r p+ e+++++++ l    +++ ++V++WFqN++a+e++
  Aco022929.1  68 STRWIPTSEQIRILRDLYYNcgIRSPTSEQIQRISATLrrygKIEGKNVFYWFQNHKARERQ 129
                  58*****************8678*************************************97 PP

2Wus_type_Homeobox111.64.1e-3667131265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++tRW Pt+eQi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
        Aco022929.1  67 SSTRWIPTSEQIRILRDLYYnCGIRSPTSEQIQRISATLRRYGKIEGKNVFYWFQNHKARERQKK 131
                        789***************9769*****************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.55E-1249131IPR009057Homeodomain-like
PROSITE profilePS5007110.31764130IPR001356Homeobox domain
SMARTSM003891.4E-566134IPR001356Homeobox domain
PfamPF000461.3E-1669129IPR001356Homeobox domain
CDDcd000862.21E-569131No hitNo description
Gene3DG3DSA:1.10.10.601.9E-770129IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEPYQYNAHH DQETAPPIPN TIGMGMGMGI GIGGGAGGGG GGLINSSKYS GSSSSSASSS  60
SMVCRQSSTR WIPTSEQIRI LRDLYYNCGI RSPTSEQIQR ISATLRRYGK IEGKNVFYWF  120
QNHKARERQK KRLSVDPNAA ATPSHNKPVT AAAAAVSSVS FPLYHILF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC6111134e-47KC611113.1 Oryza meridionalis WUS (WUS) gene, partial cds.
GenBankKC6111204e-47KC611120.1 Oryza granulata WUS (WUS) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6YBV19e-44WUS_ANTMA; Protein WUSCHEL
TrEMBLM0TFI32e-45M0TFI3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P07430_0016e-45(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-32WOX family protein